IL_1FG0_021

3D structure

PDB id

1FG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

LARGE RIBOSOMAL SUBUNIT COMPLEXED WITH A 13 BP MINIHELIX-PUROMYCIN COMPOUND

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCG*CAGG

Length

7 nucleotides

Bulged bases

1FG0|1|A|A|2637

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1FG0_021 not in the Motif Atlas

Geometric match to IL_4V9F_017

Geometric discrepancy: 0.2434

The information below is about IL_4V9F_017

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

1FG0|1|A|C|2625
1FG0|1|A|C|2626
1FG0|1|A|G|2627
*
1FG0|1|A|C|2636
1FG0|1|A|A|2637
1FG0|1|A|G|2638
1FG0|1|A|G|2639

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain B

5'-R(CCGGCGGGCUGGUUCAAACCGGCCCGCCGGACC)-3'-5'-R(P-PUROMYCIN)-3'