IL_1FJG_065

3D structure

PDB id

1FJG (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTICS STREPTOMYCIN, SPECTINOMYCIN, AND PAROMOMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUUGC*GGCACUC

Length

12 nucleotides

Bulged bases

1FJG|1|A|U|1125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1FJG_065 not in the Motif Atlas

Homologous match to IL_4LFB_048

Geometric discrepancy: 0.2069

The information below is about IL_4LFB_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85222.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

1FJG|1|A|G|1124
1FJG|1|A|U|1125
1FJG|1|A|U|1126
1FJG|1|A|G|1127
1FJG|1|A|C|1128
*
1FJG|1|A|G|1143
1FJG|1|A|G|1144
1FJG|1|A|C|1145
1FJG|1|A|A|1146
1FJG|1|A|C|1147
1FJG|1|A|U|1148
1FJG|1|A|C|1149

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain I

30S RIBOSOMAL PROTEIN S9

Chain J

30S RIBOSOMAL PROTEIN S10