IL_1FKA_024
3D structure
- PDB id
- 1FKA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- STRUCTURE OF FUNCTIONALLY ACTIVATED SMALL RIBOSOMAL SUBUNIT AT 3.3 A RESOLUTION
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GUC*GAUAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1FKA_024 not in the Motif Atlas
- Geometric match to IL_6CK5_002
- Geometric discrepancy: 0.3967
- The information below is about IL_6CK5_002
- Detailed Annotation
- 8-nt loop receptor
- Broad Annotation
- Loop-receptor motif
- Motif group
- IL_36516.3
- Basepair signature
- cWW-cWW-cSH-cWW-L
- Number of instances in this motif group
- 7
Unit IDs
1FKA|1|A|G|581
1FKA|1|A|U|582
1FKA|1|A|C|583
*
1FKA|1|A|G|623
1FKA|1|A|A|624
1FKA|1|A|U|625
1FKA|1|A|A|626
1FKA|1|A|C|627
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain H
- 30S RIBOSOMAL PROTEIN S8
- Chain Q
- 30S RIBOSOMAL PROTEIN S17
Coloring options: