IL_1FKA_028
3D structure
- PDB id
- 1FKA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- STRUCTURE OF FUNCTIONALLY ACTIVATED SMALL RIBOSOMAL SUBUNIT AT 3.3 A RESOLUTION
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GGAGAG*UGGUC
- Length
- 11 nucleotides
- Bulged bases
- 1FKA|1|A|A|649
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1FKA_028 not in the Motif Atlas
- Geometric match to IL_8D29_010
- Geometric discrepancy: 0.3998
- The information below is about IL_8D29_010
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
1FKA|1|A|G|645
1FKA|1|A|G|646
1FKA|1|A|A|647
1FKA|1|A|G|648
1FKA|1|A|A|649
1FKA|1|A|G|650
*
1FKA|1|A|U|724
1FKA|1|A|G|725
1FKA|1|A|G|726
1FKA|1|A|U|727
1FKA|1|A|C|728
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain O
- 30S RIBOSOMAL PROTEIN S15
- Chain R
- 30S RIBOSOMAL PROTEIN S18
Coloring options: