Loop IL_1FKA

3D structure

PDB id: 1FKA (explore in PDB, NAKB, or RNA 3D Hub)
Description: STRUCTURE OF FUNCTIONALLY ACTIVATED SMALL RIBOSOMAL SUBUNIT AT 3.3 A RESOLUTION
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å

Loop

Sequence: CUACAAAGCGAUGCCAC*GAGCUAAUCGCAAAAAGGUG
Length: 37 nucleotides
Bulged bases: 1FKA|1|A|A|1226, 1FKA|1|A|C|1227, 1FKA|1|A|A|1228, 1FKA|1|A|A|1229, 1FKA|1|A|U|1235, 1FKA|1|A|U|1256, 1FKA|1|A|A|1257, 1FKA|1|A|A|1258, 1FKA|1|A|U|1259, 1FKA|1|A|C|1260, 1FKA|1|A|G|1261, 1FKA|1|A|A|1265, 1FKA|1|A|A|1266, 1FKA|1|A|A|1267, 1FKA|1|A|G|1268, 1FKA|1|A|G|1269
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

1FKA|1|A|C|1224
1FKA|1|A|U|1225
1FKA|1|A|A|1226
1FKA|1|A|C|1227
1FKA|1|A|A|1228
1FKA|1|A|A|1229
1FKA|1|A|A|1230
1FKA|1|A|G|1231
1FKA|1|A|C|1232
1FKA|1|A|G|1233
1FKA|1|A|A|1234
1FKA|1|A|U|1235
1FKA|1|A|G|1236
1FKA|1|A|C|1237
1FKA|1|A|C|1238
1FKA|1|A|A|1239
1FKA|1|A|C|1240
*
1FKA|1|A|G|1252
1FKA|1|A|A|1253
1FKA|1|A|G|1254
1FKA|1|A|C|1255
1FKA|1|A|U|1256
1FKA|1|A|A|1257
1FKA|1|A|A|1258
1FKA|1|A|U|1259
1FKA|1|A|C|1260
1FKA|1|A|G|1261
1FKA|1|A|C|1262
1FKA|1|A|A|1263
1FKA|1|A|A|1264
1FKA|1|A|A|1265
1FKA|1|A|A|1266
1FKA|1|A|A|1267
1FKA|1|A|G|1268
1FKA|1|A|G|1269
1FKA|1|A|U|1270
1FKA|1|A|G|1271

Current chains

Chain A: 16S RIBOSOMAL RNA

Nearby chains

Chain C: 30S RIBOSOMAL PROTEIN S3
Chain G: 30S RIBOSOMAL PROTEIN S7
Chain I: 30S RIBOSOMAL PROTEIN S9
Chain J: 30S RIBOSOMAL PROTEIN S10

IL_1FKA_075