IL_1FMN_001

3D structure

PDB id

1FMN (explore in PDB, NAKB, or RNA 3D Hub)

Description

SOLUTION STRUCTURE OF FMN-RNA APTAMER COMPLEX, NMR, 5 STRUCTURES

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UAGGAUAU*AGAAGGA

Length

15 nucleotides

Bulged bases

1FMN|1|A|A|11

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1FMN_001 not in the Motif Atlas

Geometric match to IL_4WF9_031

Geometric discrepancy: 0.1936

The information below is about IL_4WF9_031

Detailed Annotation

7x7 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_29198.2

Basepair signature

cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

1FMN|1|A|U|7
1FMN|1|A|A|8
1FMN|1|A|G|9
1FMN|1|A|G|10
1FMN|1|A|A|11
1FMN|1|A|U|12
1FMN|1|A|A|13
1FMN|1|A|U|14
*
1FMN|1|A|A|23
1FMN|1|A|G|24
1FMN|1|A|A|25
1FMN|1|A|A|26
1FMN|1|A|G|27
1FMN|1|A|G|28
1FMN|1|A|A|29

Current chains

Chain A

RNA (5'-R(*GP*GP*CP*GP*UP*GP*UP*AP*GP*GP *AP*UP*AP*UP*GP*CP*UP*UP*CP*GP*GP*CP*AP*GP*AP*AP*GP *GP*AP*CP*AP*CP*GP*CP*C)-3')

Nearby chains