3D structure

PDB id
1HNW (explore in PDB, NAKB, or RNA 3D Hub)
Description
STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH TETRACYCLINE
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
CGG*CAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1HNW_006 not in the Motif Atlas
Homologous match to IL_4LFB_006
Geometric discrepancy: 0.0775
The information below is about IL_4LFB_006
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

1HNW|1|A|C|67
1HNW|1|A|G|68
1HNW|1|A|G|69
*
1HNW|1|A|C|99
1HNW|1|A|A|101
1HNW|1|A|G|102

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain T
30S RIBOSOMAL PROTEIN S20

Coloring options:


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