IL_1HNW_066

3D structure

PDB id

1HNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH TETRACYCLINE

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1HNW_066 not in the Motif Atlas

Homologous match to IL_4LFB_067

Geometric discrepancy: 0.0849

The information below is about IL_4LFB_067

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

1HNW|1|A|C|1259
1HNW|1|A|C|1260
1HNW|1|A|A|1261
1HNW|1|A|C|1262
*
1HNW|1|A|G|1273
1HNW|1|A|G|1274
1HNW|1|A|A|1275
1HNW|1|A|G|1276

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain V

30S RIBOSOMAL PROTEIN THX