3D structure

PDB id
1HNX (explore in PDB, NAKB, or RNA 3D Hub)
Description
STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH PACTAMYCIN
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
GA*UGAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1HNX_027 not in the Motif Atlas
Homologous match to IL_4LFB_027
Geometric discrepancy: 0.0879
The information below is about IL_4LFB_027
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
Major groove platform
Motif group
IL_74641.1
Basepair signature
cWW-tSH-cWW-L
Number of instances in this motif group
32

Unit IDs

1HNX|1|A|G|654
1HNX|1|A|A|655
*
1HNX|1|A|U|751
1HNX|1|A|G|752
1HNX|1|A|A|753
1HNX|1|A|C|754

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain H
30S RIBOSOMAL PROTEIN S8
Chain O
30S RIBOSOMAL PROTEIN S15

Coloring options:


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