3D structure

PDB id
1HNZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH HYGROMYCIN B
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
GGAGC*GUGAC
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1HNZ_062 not in the Motif Atlas
Geometric match to IL_4WFL_001
Geometric discrepancy: 0.2899
The information below is about IL_4WFL_001
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

1HNZ|1|A|G|1416
1HNZ|1|A|G|1417
1HNZ|1|A|A|1418
1HNZ|1|A|G|1419
1HNZ|1|A|C|1420
*
1HNZ|1|A|G|1480
1HNZ|1|A|U|1481
1HNZ|1|A|G|1482
1HNZ|1|A|A|1483
1HNZ|1|A|C|1484

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain L
30S RIBOSOMAL PROTEIN S12

Coloring options:


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