IL_1HWQ_009

3D structure

PDB id

1HWQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

SOLUTION STRUCTURE OF THE VS RIBOZYME SUBSTRATE STEM-LOOP

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CGAAG*CCGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1HWQ_009 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.3124

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.3

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

1HWQ|9|A|C|5
1HWQ|9|A|G|6
1HWQ|9|A|A|7
1HWQ|9|A|A|8
1HWQ|9|A|G|9
*
1HWQ|9|A|C|22
1HWQ|9|A|C|23
1HWQ|9|A|G|24
1HWQ|9|A|A|25
1HWQ|9|A|G|26

Current chains

Chain A

VS RIBOZYME SUBSTRATE RNA

Nearby chains