IL_1HWQ_016

3D structure

PDB id

1HWQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

SOLUTION STRUCTURE OF THE VS RIBOZYME SUBSTRATE STEM-LOOP

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CGAAG*CCGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1HWQ_016 not in the Motif Atlas

Geometric match to IL_2A64_006

Geometric discrepancy: 0.3944

The information below is about IL_2A64_006

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.3

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

26

Unit IDs

1HWQ|16|A|C|5
1HWQ|16|A|G|6
1HWQ|16|A|A|7
1HWQ|16|A|A|8
1HWQ|16|A|G|9
*
1HWQ|16|A|C|22
1HWQ|16|A|C|23
1HWQ|16|A|G|24
1HWQ|16|A|A|25
1HWQ|16|A|G|26

Current chains

Chain A

VS RIBOZYME SUBSTRATE RNA

Nearby chains