IL_1HYS_004

3D structure

PDB id

1HYS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH A POLYPURINE TRACT RNA:DNA

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAA*TTTCT

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

1HYS|1|E|G|871
1HYS|1|E|A|872
1HYS|1|E|A|873
1HYS|1|E|A|874
*
1HYS|1|F|DT|880
1HYS|1|F|DT|881
1HYS|1|F|DT|882
1HYS|1|F|DC|883
1HYS|1|F|DT|884

Current chains

Chain E

5'-R(*UP*CP*AP*GP*CP*CP*AP*CP*UP*UP*UP*UP*UP*AP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3'

Chain F

5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*TP*AP*AP*AP*AP*AP*GP*TP*GP*GP*CP*TP*G)-3'

Nearby chains

Chain A

HIV-1 REVERSE TRANSCRIPTASE

Chain B

HIV-1 REVERSE TRANSCRIPTASE