IL_1I2Y_006

3D structure

PDB id

1I2Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

1.66 A STRUCTURE OF A-DUPLEX WITH BULGED ADENOSINE, SPERMINE FORM

Experimental method

X-RAY DIFFRACTION

Resolution

1.66 Å

Loop

Sequence

GATATAC*GATATAC

Length

14 nucleotides

Bulged bases

1I2Y|1|E|A|208, 1I2Y|1|F|A|228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1I2Y|1|E|G|203
1I2Y|1|E|DA|204
1I2Y|1|E|DT|205
1I2Y|1|E|DA|206
1I2Y|1|E|DT|207
1I2Y|1|E|A|208
1I2Y|1|E|C|209
*
1I2Y|1|F|G|223
1I2Y|1|F|DA|224
1I2Y|1|F|DT|225
1I2Y|1|F|DA|226
1I2Y|1|F|DT|227
1I2Y|1|F|A|228
1I2Y|1|F|C|229

Current chains

Chain E

DNA/RNA (5'-R(*GP*CP*G)-D(P*AP*TP*AP*T)-R(P*AP*CP*GP*U)-3')

Chain F

DNA/RNA (5'-R(*GP*CP*G)-D(P*AP*TP*AP*T)-R(P*AP*CP*GP*U)-3')

Nearby chains

Chain A

DNA/RNA (5'-R(*GP*CP*G)-D(P*AP*TP*AP*T)-R(P*AP*CP*GP*U)-3')

Chain B

DNA/RNA (5'-R(*GP*CP*G)-D(P*AP*TP*AP*T)-R(P*AP*CP*GP*U)-3')