IL_1I95_017

3D structure

PDB id

1I95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH EDEINE

Experimental method

X-RAY DIFFRACTION

Resolution

4.5 Å

Loop

Sequence

GGACG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1I95_017 not in the Motif Atlas

Geometric match to IL_4LFB_018

Geometric discrepancy: 0.1523

The information below is about IL_4LFB_018

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

1I95|1|A|G|440
1I95|1|A|G|441
1I95|1|A|A|442
1I95|1|A|C|443
1I95|1|A|G|444
*
1I95|1|A|C|467
1I95|1|A|G|468
1I95|1|A|G|469
1I95|1|A|U|470
1I95|1|A|A|471
1I95|1|A|C|472

Current chains

Chain A

16S RRNA

Nearby chains

Chain P

30S RIBOSOMAL PROTEIN S16