IL_1I96_037

3D structure

PDB id

1I96 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH THE TRANSLATION INITIATION FACTOR IF3 (C-TERMINAL DOMAIN)

Experimental method

X-RAY DIFFRACTION

Resolution

4.2 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

1I96|1|A|A|1376

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1I96_037 not in the Motif Atlas

Homologous match to IL_6CZR_147

Geometric discrepancy: 0.1682

The information below is about IL_6CZR_147

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

1I96|1|A|G|899
1I96|1|A|A|900
*
1I96|1|A|U|1375
1I96|1|A|A|1376
1I96|1|A|C|1377

Current chains

Chain A

16S RRNA

Nearby chains

Chain E

30S RIBOSOMAL PROTEIN S5