IL_1I96_064

3D structure

PDB id

1I96 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH THE TRANSLATION INITIATION FACTOR IF3 (C-TERMINAL DOMAIN)

Experimental method

X-RAY DIFFRACTION

Resolution

4.2 Å

Loop

Sequence

CGAAG*CGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1I96_064 not in the Motif Atlas

Homologous match to IL_4LFB_062

Geometric discrepancy: 0.0899

The information below is about IL_4LFB_062

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.7

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

1I96|1|A|C|1413
1I96|1|A|G|1414
1I96|1|A|A|1415
1I96|1|A|A|1416
1I96|1|A|G|1417
*
1I96|1|A|C|1443
1I96|1|A|G|1444
1I96|1|A|A|1445
1I96|1|A|G|1446

Current chains

Chain A

16S RRNA

Nearby chains