3D structure

PDB id
1I97 (explore in PDB, NAKB, or RNA 3D Hub)
Description
CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH TETRACYCLINE
Experimental method
X-RAY DIFFRACTION
Resolution
4.5 Å

Loop

Sequence
GGAAGAAGC*GUGUAAAC
Length
17 nucleotides
Bulged bases
1I97|1|A|A|407
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1I97_024 not in the Motif Atlas
Geometric match to IL_6CZR_129
Geometric discrepancy: 0.213
The information below is about IL_6CZR_129
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_58819.1
Basepair signature
cWW-L-R-tWH-R-L-tHW-tSS-R-L-R-L-cWW
Number of instances in this motif group
1

Unit IDs

1I97|1|A|G|404
1I97|1|A|G|405
1I97|1|A|A|406
1I97|1|A|A|407
1I97|1|A|G|408
1I97|1|A|A|409
1I97|1|A|A|410
1I97|1|A|G|411
1I97|1|A|C|412
*
1I97|1|A|G|421
1I97|1|A|U|422
1I97|1|A|G|423
1I97|1|A|U|424
1I97|1|A|A|425
1I97|1|A|A|426
1I97|1|A|A|427
1I97|1|A|C|428

Current chains

Chain A
16S RRNA

Nearby chains

Chain D
30S RIBOSOMAL PROTEIN S4

Coloring options:


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