3D structure

PDB id
1I97 (explore in PDB, NAKB, or RNA 3D Hub)
Description
CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH TETRACYCLINE
Experimental method
X-RAY DIFFRACTION
Resolution
4.5 Å

Loop

Sequence
CGG*CCCG
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1I97_100 not in the Motif Atlas
Geometric match to IL_8C3A_059
Geometric discrepancy: 0.383
The information below is about IL_8C3A_059
Detailed Annotation
Major groove platform with extra cWW
Broad Annotation
No text annotation
Motif group
IL_63959.1
Basepair signature
cWW-cSH-cWW-cWW
Number of instances in this motif group
18

Unit IDs

1I97|1|A|C|639
1I97|1|A|G|640
1I97|1|A|G|641
*
1I97|1|A|C|730
1I97|1|A|C|731
1I97|1|A|C|732
1I97|1|A|G|733

Current chains

Chain A
16S RRNA

Nearby chains

Chain O
30S RIBOSOMAL PROTEIN S15

Coloring options:


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