3D structure

PDB id
1I97 (explore in PDB, NAKB, or RNA 3D Hub)
Description
CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH TETRACYCLINE
Experimental method
X-RAY DIFFRACTION
Resolution
4.5 Å

Loop

Sequence
GGGGGC*GCCUU
Length
11 nucleotides
Bulged bases
1I97|1|A|G|903
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1I97_102 not in the Motif Atlas
Geometric match to IL_7VYX_004
Geometric discrepancy: 0.3176
The information below is about IL_7VYX_004
Detailed Annotation
Partly complementary
Broad Annotation
Partly complementary
Motif group
IL_49751.4
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
16

Unit IDs

1I97|1|A|G|902
1I97|1|A|G|903
1I97|1|A|G|904
1I97|1|A|G|905
1I97|1|A|G|906
1I97|1|A|C|907
*
1I97|1|A|G|1369
1I97|1|A|C|1370
1I97|1|A|C|1371
1I97|1|A|U|1372
1I97|1|A|U|1373

Current chains

Chain A
16S RRNA

Nearby chains

No other chains within 10Å

Coloring options:


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