IL_1I9F_001

3D structure

PDB id

1I9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL CHARACTERIZATION OF THE COMPLEX OF THE REV RESPONSE ELEMENT RNA WITH A SELECTED PEPTIDE

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GUC*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1I9F_001 not in the Motif Atlas

Geometric match to IL_7A0S_026

Geometric discrepancy: 0.2035

The information below is about IL_7A0S_026

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

1I9F|1|A|G|2
1I9F|1|A|U|3
1I9F|1|A|C|4
*
1I9F|1|A|G|31
1I9F|1|A|G|32
1I9F|1|A|C|33

Current chains

Chain A

REV RESPONSE ELEMENT RNA

Nearby chains

Chain B

RSG-1.2 PEPTIDE