IL_1IBM_052

3D structure

PDB id

1IBM (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE

Experimental method

X-RAY DIFFRACTION

Resolution

3.31 Å

Loop

Sequence

GAUGC*GCUAAUC

Length

12 nucleotides

Bulged bases

1IBM|1|A|U|1257, 1IBM|1|A|A|1280, 1IBM|1|A|U|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1IBM|1|A|G|1255
1IBM|1|A|A|1256
1IBM|1|A|U|1257
1IBM|1|A|G|1258
1IBM|1|A|C|1259
*
1IBM|1|A|G|1276
1IBM|1|A|C|1277
1IBM|1|A|U|1278
1IBM|1|A|A|1279
1IBM|1|A|A|1280
1IBM|1|A|U|1281
1IBM|1|A|C|1282

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain C

30S RIBOSOMAL PROTEIN S3

Chain J

30S RIBOSOMAL PROTEIN S10

Chain N

30S RIBOSOMAL PROTEIN S14