IL_1IBM_057

3D structure

PDB id

1IBM (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE

Experimental method

X-RAY DIFFRACTION

Resolution

3.31 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1IBM_057 not in the Motif Atlas

Homologous match to IL_4LFB_068

Geometric discrepancy: 0.1033

The information below is about IL_4LFB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

6

Unit IDs

1IBM|1|A|G|1401
1IBM|1|A|C|1402
1IBM|1|A|C|1403
1IBM|1|A|C|1404
*
1IBM|1|A|G|1497
1IBM|1|A|U|1498
1IBM|1|A|A|1499
1IBM|1|A|A|1500
1IBM|1|A|C|1501

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain X

P-SITE MESSENGER RNA FRAGMENT

Chain Z

A-SITE MESSENGER RNA FRAGMENT