IL_1IBM_069

3D structure

PDB id

1IBM (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE

Experimental method

X-RAY DIFFRACTION

Resolution

3.31 Å

Loop

Sequence

GGCC*GGUCAGC

Length

11 nucleotides

Bulged bases

1IBM|1|A|C|1200, 1IBM|1|A|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1IBM|1|A|G|1057
1IBM|1|A|G|1058
1IBM|1|A|C|1059
1IBM|1|A|C|1060
*
1IBM|1|A|G|1197
1IBM|1|A|G|1198
1IBM|1|A|U|1199
1IBM|1|A|C|1200
1IBM|1|A|A|1201
1IBM|1|A|G|1202
1IBM|1|A|C|1203

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain C

30S RIBOSOMAL PROTEIN S3

Chain J

30S RIBOSOMAL PROTEIN S10

Chain N

30S RIBOSOMAL PROTEIN S14

Chain Y

ANTICODON STEM-LOOP OF PHENYLALANINE TRANSFER RNA