IL_1IBM_072

3D structure

PDB id

1IBM (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE

Experimental method

X-RAY DIFFRACTION

Resolution

3.31 Å

Loop

Sequence

UAGGGAACC*GGGUGCCCCGCGAGGGGAGCCCUA

Length

33 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1IBM|1|A|U|1000
1IBM|1|A|A|1001
1IBM|1|A|G|1002
1IBM|1|A|G|1003
1IBM|1|A|G|1003|||A
1IBM|1|A|A|1004
1IBM|1|A|A|1005
1IBM|1|A|C|1006
1IBM|1|A|C|1007
*
1IBM|1|A|G|1022
1IBM|1|A|G|1023
1IBM|1|A|G|1024
1IBM|1|A|U|1025
1IBM|1|A|G|1026
1IBM|1|A|C|1027
1IBM|1|A|C|1028
1IBM|1|A|C|1029
1IBM|1|A|C|1030
1IBM|1|A|G|1030|||A
1IBM|1|A|C|1030|||B
1IBM|1|A|G|1030|||C
1IBM|1|A|A|1030|||D
1IBM|1|A|G|1031
1IBM|1|A|G|1032
1IBM|1|A|G|1033
1IBM|1|A|G|1034
1IBM|1|A|A|1035
1IBM|1|A|G|1036
1IBM|1|A|C|1037
1IBM|1|A|C|1038
1IBM|1|A|C|1039
1IBM|1|A|U|1040
1IBM|1|A|A|1041

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains