IL_1IKD_002

3D structure

PDB id

1IKD (explore in PDB, NAKB, or RNA 3D Hub)

Description

ACCEPTOR STEM, NMR, 30 STRUCTURES

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CUC*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CUC,GAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1IKD_002 not in the Motif Atlas

Geometric match to IL_3GM7_003

Geometric discrepancy: 0.1833

The information below is about IL_3GM7_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

1IKD|9|A|C|5
1IKD|9|A|U|6
1IKD|9|A|C|7
*
1IKD|9|A|G|12
1IKD|9|A|A|13
1IKD|9|A|G|14

Current chains

Chain A

TRNA ALA ACCEPTOR STEM

Nearby chains