IL_1J5E_039

3D structure

PDB id

1J5E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1J5E_039 not in the Motif Atlas

Homologous match to IL_4LFB_039

Geometric discrepancy: 0.1809

The information below is about IL_4LFB_039

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

1J5E|1|A|G|993
1J5E|1|A|A|994
1J5E|1|A|C|995
1J5E|1|A|A|996
1J5E|1|A|U|997
*
1J5E|1|A|A|1044
1J5E|1|A|C|1045

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain N

30S RIBOSOMAL PROTEIN S14