IL_1J5E_046
3D structure
- PDB id
- 1J5E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S Ribosomal Subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.05 Å
Loop
- Sequence
- GUUGC*GGCACUC
- Length
- 12 nucleotides
- Bulged bases
- 1J5E|1|A|U|1125
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1J5E_046 not in the Motif Atlas
- Geometric match to IL_4LFB_048
- Geometric discrepancy: 0.2497
- The information below is about IL_4LFB_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_85222.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-L-L
- Number of instances in this motif group
- 1
Unit IDs
1J5E|1|A|G|1124
1J5E|1|A|U|1125
1J5E|1|A|U|1126
1J5E|1|A|G|1127
1J5E|1|A|C|1128
*
1J5E|1|A|G|1143
1J5E|1|A|G|1144
1J5E|1|A|C|1145
1J5E|1|A|A|1146
1J5E|1|A|C|1147
1J5E|1|A|U|1148
1J5E|1|A|C|1149
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain I
- 30S RIBOSOMAL PROTEIN S9
- Chain J
- 30S RIBOSOMAL PROTEIN S10
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