IL_1JBR_001

3D structure

PDB id

1JBR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Ribotoxin Restrictocin and a 31-mer SRD RNA Inhibitor

Experimental method

X-RAY DIFFRACTION

Resolution

2.15 Å

Loop

Sequence

CUCAGUAC*GGAACCG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

1JBR|1|C|C|6
1JBR|1|C|U|7
1JBR|1|C|C|8
1JBR|1|C|A|9
1JBR|1|C|G|10
1JBR|1|C|U|11
1JBR|1|C|A|12
1JBR|1|C|C|13
*
1JBR|1|F|G|18
1JBR|1|F|G|19
1JBR|1|F|A|20
1JBR|1|F|A|21
1JBR|1|F|C|22
1JBR|1|F|C|23
1JBR|1|F|G|24

Current chains

Chain C

5'-R(*GP*CP*GP*CP*UP*CP*CP*UP*CP*AP*GP*UP*AP*CP*GP*AP*GP*(A23))-3'

Chain F

5'-R(*GP*GP*AP*AP*CP*CP*GP*GP*AP*GP*CP*GP*C)-3'

Nearby chains

Chain A

Restrictocin