IL_1JID_003

3D structure

PDB id

1JID (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human SRP19 in complex with helix 6 of Human SRP RNA

Experimental method

X-RAY DIFFRACTION

Resolution

1.8 Å

Loop

Sequence

C(5BU)C*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1JID_003 not in the Motif Atlas

Geometric match to IL_5MWI_005

Geometric discrepancy: 0.1039

The information below is about IL_5MWI_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

1JID|1|B|C|141
1JID|1|B|5BU|142
1JID|1|B|C|143
*
1JID|1|B|G|154
1JID|1|B|G|155
1JID|1|B|G|156

Current chains

Chain B

HELIX 6 OF HUMAN SRP RNA

Nearby chains

Chain A

SIGNAL RECOGNITION PARTICLE 19 KDA PROTEIN