IL_1JJ2_006
3D structure
- PDB id
- 1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- AGAACUG*CUCAGUAU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1JJ2_006 not in the Motif Atlas
- Geometric match to IL_4V9F_006
- Geometric discrepancy: 0.0159
- The information below is about IL_4V9F_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.3
- Basepair signature
- cWW-cWW-tSH-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 20
Unit IDs
1JJ2|1|0|A|158
1JJ2|1|0|G|159
1JJ2|1|0|A|160
1JJ2|1|0|A|161
1JJ2|1|0|C|162
1JJ2|1|0|U|163
1JJ2|1|0|G|164
*
1JJ2|1|0|C|171
1JJ2|1|0|U|172
1JJ2|1|0|C|173
1JJ2|1|0|A|174
1JJ2|1|0|G|175
1JJ2|1|0|U|176
1JJ2|1|0|A|177
1JJ2|1|0|U|178
Current chains
- Chain 0
- 23S RRNA
Nearby chains
- Chain 2
- RIBOSOMAL PROTEIN L44E
- Chain C
- RIBOSOMAL PROTEIN L4
- Chain K
- RIBOSOMAL PROTEIN L15
- Chain L
- RIBOSOMAL PROTEIN L15E
- Chain Z
- RIBOSOMAL PROTEIN L37E
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