IL_1JJ2_008

3D structure

PDB id

1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1JJ2_008 not in the Motif Atlas

Homologous match to IL_4V9F_008

Geometric discrepancy: 0.0256

The information below is about IL_4V9F_008

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

1JJ2|1|0|C|245
1JJ2|1|0|G|246
1JJ2|1|0|A|247
1JJ2|1|0|A|248
*
1JJ2|1|0|U|265
1JJ2|1|0|G|266

Current chains

Chain 0

23S RRNA

Nearby chains

Chain F

RIBOSOMAL PROTEIN L7AE

Chain L

RIBOSOMAL PROTEIN L15E