IL_1JJ2_009

3D structure

PDB id

1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

AG*CAAUGU

Length

8 nucleotides

Bulged bases

1JJ2|1|0|U|263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1JJ2_009 not in the Motif Atlas

Geometric match to IL_4V9F_009

Geometric discrepancy: 0.0288

The information below is about IL_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10396.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

1JJ2|1|0|A|248
1JJ2|1|0|G|249
*
1JJ2|1|0|C|260
1JJ2|1|0|A|261
1JJ2|1|0|A|262
1JJ2|1|0|U|263
1JJ2|1|0|G|264
1JJ2|1|0|U|265

Current chains

Chain 0

23S RRNA

Nearby chains

Chain F

RIBOSOMAL PROTEIN L7AE

Chain L

RIBOSOMAL PROTEIN L15E