IL_1JJ2_012

3D structure

PDB id

1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CAGC*GACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1JJ2_012 not in the Motif Atlas

Geometric match to IL_6CZR_168

Geometric discrepancy: 0.2039

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

1JJ2|1|0|C|287
1JJ2|1|0|A|288
1JJ2|1|0|G|289
1JJ2|1|0|C|290
*
1JJ2|1|0|G|362
1JJ2|1|0|A|363
1JJ2|1|0|C|364
1JJ2|1|0|G|365

Current chains

Chain 0

23S RRNA

Nearby chains

Chain L

RIBOSOMAL PROTEIN L15E