IL_1JJ2_014

3D structure

PDB id

1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

1JJ2|1|0|U|308

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1JJ2_014 not in the Motif Atlas

Homologous match to IL_4V9F_013

Geometric discrepancy: 0.0429

The information below is about IL_4V9F_013

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

1JJ2|1|0|G|307
1JJ2|1|0|U|308
1JJ2|1|0|C|309
*
1JJ2|1|0|G|322
1JJ2|1|0|C|323

Current chains

Chain 0

23S RRNA

Nearby chains

Chain S

RIBOSOMAL PROTEIN L24

Chain X

RIBOSOMAL PROTEIN L32E