IL_1JJ2_023

3D structure

PDB id

1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGCAG*CGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1JJ2_023 not in the Motif Atlas

Homologous match to IL_4V9F_022

Geometric discrepancy: 0.0311

The information below is about IL_4V9F_022

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

1JJ2|1|0|C|705
1JJ2|1|0|G|706
1JJ2|1|0|C|707
1JJ2|1|0|A|708
1JJ2|1|0|G|709
*
1JJ2|1|0|C|719
1JJ2|1|0|G|720
1JJ2|1|0|A|721
1JJ2|1|0|G|722
1JJ2|1|0|G|723

Current chains

Chain 0

23S RRNA

Nearby chains

Chain N

RIBOSOMAL PROTEIN L18E