IL_1JJ2_025
3D structure
- PDB id
- 1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- GAAUC*GCAACAGC
- Length
- 13 nucleotides
- Bulged bases
- 1JJ2|1|0|A|894, 1JJ2|1|0|G|898
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1JJ2_025 not in the Motif Atlas
- Geometric match to IL_4V9F_024
- Geometric discrepancy: 0.0184
- The information below is about IL_4V9F_024
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.1
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
1JJ2|1|0|G|765
1JJ2|1|0|A|766
1JJ2|1|0|A|767
1JJ2|1|0|U|768
1JJ2|1|0|C|769
*
1JJ2|1|0|G|892
1JJ2|1|0|C|893
1JJ2|1|0|A|894
1JJ2|1|0|A|895
1JJ2|1|0|C|896
1JJ2|1|0|A|897
1JJ2|1|0|G|898
1JJ2|1|0|C|899
Current chains
- Chain 0
- 23S RRNA
Nearby chains
- Chain C
- RIBOSOMAL PROTEIN L4
- Chain K
- RIBOSOMAL PROTEIN L15
- Chain L
- RIBOSOMAL PROTEIN L15E
- Chain Z
- RIBOSOMAL PROTEIN L37E
Coloring options: