IL_1JJ2_028
3D structure
- PDB id
- 1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- UGAAG*UGGAA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1JJ2_028 not in the Motif Atlas
- Geometric match to IL_4V9F_027
- Geometric discrepancy: 0.0212
- The information below is about IL_4V9F_027
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_15190.2
- Basepair signature
- cWW-tSH-tHS-tHS-cWW
- Number of instances in this motif group
- 24
Unit IDs
1JJ2|1|0|U|794
1JJ2|1|0|G|795
1JJ2|1|0|A|796
1JJ2|1|0|A|797
1JJ2|1|0|G|798
*
1JJ2|1|0|U|815
1JJ2|1|0|G|816
1JJ2|1|0|G|817
1JJ2|1|0|A|818
1JJ2|1|0|A|819
Current chains
- Chain 0
- 23S RRNA
Nearby chains
- Chain A
- RIBOSOMAL PROTEIN L2
- Chain O
- RIBOSOMAL PROTEIN L19E
- Chain Y
- RIBOSOMAL PROTEIN L37Ae
Coloring options: