IL_1JJ2_038
3D structure
- PDB id
- 1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- UUAAG*CGAGA
- Length
- 10 nucleotides
- Bulged bases
- 1JJ2|1|0|G|1260
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1JJ2_038 not in the Motif Atlas
- Homologous match to IL_4V9F_037
- Geometric discrepancy: 0.0236
- The information below is about IL_4V9F_037
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_08938.1
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 22
Unit IDs
1JJ2|1|0|U|1095
1JJ2|1|0|U|1096
1JJ2|1|0|A|1097
1JJ2|1|0|A|1098
1JJ2|1|0|G|1099
*
1JJ2|1|0|C|1257
1JJ2|1|0|G|1258
1JJ2|1|0|A|1259
1JJ2|1|0|G|1260
1JJ2|1|0|A|1261
Current chains
- Chain 0
- 23S RRNA
Nearby chains
- Chain 9
- 5S ribosomal RNA; 5S rRNA
- Chain V
- RIBOSOMAL PROTEIN L30
- Chain X
- RIBOSOMAL PROTEIN L32E
Coloring options: