IL_1JJ2_039

3D structure

PDB id

1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UCCCCAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1JJ2_039 not in the Motif Atlas

Geometric match to IL_4V9F_038

Geometric discrepancy: 0.0228

The information below is about IL_4V9F_038

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

1JJ2|1|0|U|1101
1JJ2|1|0|C|1102
1JJ2|1|0|C|1103
1JJ2|1|0|C|1104
1JJ2|1|0|C|1105
1JJ2|1|0|A|1106
1JJ2|1|0|A|1107
1JJ2|1|0|G|1108
*
1JJ2|1|0|C|1254
1JJ2|1|0|A|1255

Current chains

Chain 0

23S RRNA

Nearby chains

Chain I

RIBOSOMAL PROTEIN L13

Chain V

RIBOSOMAL PROTEIN L30