IL_1JJ2_052
3D structure
- PDB id
- 1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- CUAAG*CGAAAUG
- Length
- 12 nucleotides
- Bulged bases
- 1JJ2|1|0|A|1486
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1JJ2_052 not in the Motif Atlas
- Homologous match to IL_4V9F_052
- Geometric discrepancy: 0.0212
- The information below is about IL_4V9F_052
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_10133.1
- Basepair signature
- cWW-L-R-tHW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
1JJ2|1|0|C|1456
1JJ2|1|0|U|1457
1JJ2|1|0|A|1458
1JJ2|1|0|A|1459
1JJ2|1|0|G|1460
*
1JJ2|1|0|C|1483
1JJ2|1|0|G|1484
1JJ2|1|0|A|1485
1JJ2|1|0|A|1486
1JJ2|1|0|A|1487
1JJ2|1|0|U|1488
1JJ2|1|0|G|1489
Current chains
- Chain 0
- 23S RRNA
Nearby chains
- Chain 1
- RIBOSOMAL PROTEIN L39E
- Chain A
- RIBOSOMAL PROTEIN L2
- Chain Z
- RIBOSOMAL PROTEIN L37E
Coloring options: