IL_1JJ2_056

3D structure

PDB id

1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGAAC*GCAUAG

Length

11 nucleotides

Bulged bases

1JJ2|1|0|U|1625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1JJ2_056 not in the Motif Atlas

Homologous match to IL_4V9F_056

Geometric discrepancy: 0.046

The information below is about IL_4V9F_056

Detailed Annotation

tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_62654.1

Basepair signature

cWW-tSH-tHH-tHS-cWW

Number of instances in this motif group

1

Unit IDs

1JJ2|1|0|C|1570
1JJ2|1|0|G|1571
1JJ2|1|0|A|1572
1JJ2|1|0|A|1573
1JJ2|1|0|C|1574
*
1JJ2|1|0|G|1622
1JJ2|1|0|C|1623
1JJ2|1|0|A|1624
1JJ2|1|0|U|1625
1JJ2|1|0|A|1626
1JJ2|1|0|G|1627

Current chains

Chain 0

23S RRNA

Nearby chains