IL_1JJ2_062
3D structure
- PDB id
- 1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- AUUCGG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 1JJ2|1|0|G|2033
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1JJ2_062 not in the Motif Atlas
- Geometric match to IL_4V9F_062
- Geometric discrepancy: 0.0244
- The information below is about IL_4V9F_062
- Detailed Annotation
- Intercalated tWH
- Broad Annotation
- Intercalated tWH
- Motif group
- IL_28217.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 10
Unit IDs
1JJ2|1|0|A|1747
1JJ2|1|0|U|1748
1JJ2|1|0|U|1749
1JJ2|1|0|C|1750
1JJ2|1|0|G|1751
1JJ2|1|0|G|1752
*
1JJ2|1|0|C|2031
1JJ2|1|0|U|2032
1JJ2|1|0|G|2033
1JJ2|1|0|U|2034
Current chains
- Chain 0
- 23S RRNA
Nearby chains
- Chain B
- RIBOSOMAL PROTEIN L3
- Chain J
- RIBOSOMAL PROTEIN L14
Coloring options: