IL_1JJ2_085

3D structure

PDB id

1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UUC*GUGAG

Length

8 nucleotides

Bulged bases

1JJ2|1|0|G|2611, 1JJ2|1|0|A|2612

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1JJ2_085 not in the Motif Atlas

Geometric match to IL_4V9F_087

Geometric discrepancy: 0.0319

The information below is about IL_4V9F_087

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

1JJ2|1|0|U|2545
1JJ2|1|0|U|2546
1JJ2|1|0|C|2547
*
1JJ2|1|0|G|2609
1JJ2|1|0|U|2610
1JJ2|1|0|G|2611
1JJ2|1|0|A|2612
1JJ2|1|0|G|2613

Current chains

Chain 0

23S RRNA

Nearby chains

Chain B

RIBOSOMAL PROTEIN L3

Chain J

RIBOSOMAL PROTEIN L14