IL_1JJ2_086

3D structure

PDB id

1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CC*GUCG

Length

6 nucleotides

Bulged bases

1JJ2|1|0|U|2607, 1JJ2|1|0|C|2608

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1JJ2_086 not in the Motif Atlas

Homologous match to IL_4V9F_088

Geometric discrepancy: 0.0244

The information below is about IL_4V9F_088

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.2

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

1JJ2|1|0|C|2547
1JJ2|1|0|C|2548
*
1JJ2|1|0|G|2606
1JJ2|1|0|U|2607
1JJ2|1|0|C|2608
1JJ2|1|0|G|2609

Current chains

Chain 0

23S RRNA

Nearby chains

Chain B

RIBOSOMAL PROTEIN L3

Chain J

RIBOSOMAL PROTEIN L14