IL_1JJ2_100

3D structure

PDB id

1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGUUGCCU*AUAAGC

Length

14 nucleotides

Bulged bases

1JJ2|1|9|U|23, 1JJ2|1|9|G|25

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1JJ2|1|9|G|21
1JJ2|1|9|G|22
1JJ2|1|9|U|23
1JJ2|1|9|U|24
1JJ2|1|9|G|25
1JJ2|1|9|C|26
1JJ2|1|9|C|27
1JJ2|1|9|U|28
*
1JJ2|1|9|A|54
1JJ2|1|9|U|55
1JJ2|1|9|A|56
1JJ2|1|9|A|57
1JJ2|1|9|G|58
1JJ2|1|9|C|59

Current chains

Chain 9

5S RRNA

Nearby chains

Chain D

RIBOSOMAL PROTEIN L5

Chain M

RIBOSOMAL PROTEIN L18