IL_1JU1_034

3D structure

PDB id

1JU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimer Initiation Sequence of HIV-1Lai Genomic RNA: NMR Solution Structure of the Extended Duplex

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1JU1_034 not in the Motif Atlas

Geometric match to IL_8P9A_292

Geometric discrepancy: 0.3461

The information below is about IL_8P9A_292

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15698.6

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

12

Unit IDs

1JU1|2|A|C|15
1JU1|2|A|A|16
1JU1|2|A|C|17
*
1JU1|2|B|G|30
1JU1|2|B|A|31
1JU1|2|B|A|32
1JU1|2|B|G|33

Current chains

Chain A

HIV-1Lai SL1

Chain B

HIV-1Lai SL1

Nearby chains