IL_1JZX_007

3D structure

PDB id

1JZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAACUG*CUCAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1JZX_007 not in the Motif Atlas

Homologous match to IL_5J7L_250

Geometric discrepancy: 0.1244

The information below is about IL_5J7L_250

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

1JZX|1|A|G|165
1JZX|1|A|G|166
1JZX|1|A|A|167
1JZX|1|A|A|168
1JZX|1|A|C|169
1JZX|1|A|U|170
1JZX|1|A|G|171
*
1JZX|1|A|C|178
1JZX|1|A|U|179
1JZX|1|A|C|180
1JZX|1|A|A|181
1JZX|1|A|G|182
1JZX|1|A|U|183
1JZX|1|A|A|184
1JZX|1|A|C|185

Current chains

Chain A

23S rRNA

Nearby chains