IL_1JZX_066

3D structure

PDB id

1JZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGUAAC*GAAGAAG

Length

13 nucleotides

Bulged bases

1JZX|1|A|G|1716

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1JZX_066 not in the Motif Atlas

Homologous match to IL_7RQB_068

Geometric discrepancy: 0.139

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

1JZX|1|A|C|1703
1JZX|1|A|G|1704
1JZX|1|A|U|1705
1JZX|1|A|A|1706
1JZX|1|A|A|1707
1JZX|1|A|C|1708
*
1JZX|1|A|G|1713
1JZX|1|A|A|1714
1JZX|1|A|A|1715
1JZX|1|A|G|1716
1JZX|1|A|A|1717
1JZX|1|A|A|1718
1JZX|1|A|G|1719

Current chains

Chain A

23S rRNA

Nearby chains