IL_1JZX_092

3D structure

PDB id

1JZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCGAGA*UCGGCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1JZX_092 not in the Motif Atlas

Geometric match to IL_5J7L_057

Geometric discrepancy: 0.3754

The information below is about IL_5J7L_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

1JZX|1|A|C|2445
1JZX|1|A|C|2446
1JZX|1|A|G|2447
1JZX|1|A|A|2448
1JZX|1|A|G|2449
1JZX|1|A|A|2450
*
1JZX|1|A|U|2458
1JZX|1|A|C|2459
1JZX|1|A|G|2460
1JZX|1|A|G|2461
1JZX|1|A|C|2462
1JZX|1|A|G|2463

Current chains

Chain A

23S rRNA

Nearby chains